Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4347629 chr16:89577366 A/G 0.000331 177 26.78 25.4 19.53 KM Plot
PCPG rs4353638 chr2:61499019 A/G 9.2E-5 173 21.95 31.48 10.3 KM Plot
PCPG rs4362387 chr16:90075226 C/T 8.45E-9 176 25.77 22.68 6.62 KM Plot
PCPG rs4365231 chr14:74578111 C/A 5.67E-7 175 25.4 27.43 7.4 KM Plot
PCPG rs4375853 chr2:230487559 T/C 7.34E-9 177 5.18 24.23 25.6 KM Plot
PCPG rs438050 chr5:179414645 T/C 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs4393819 chr21:38488333 G/C 9.32E-9 176 25.17 25.87 3.83 KM Plot
PCPG rs439984 chr17:3235710 T/C 0.000207 173 18.1 25.87 26.88 KM Plot
PCPG rs4417827 chr3:80595862 C/T 0.000125 177 19.87 24.03 27.4 KM Plot
PCPG rs4431246 chr4:78962710 A/G 0 178 2.93 25.43 25.4 KM Plot
PCPG rs4435459 chr2:118684731 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs4442808 chr16:90064622 G/A 9.48E-9 173 25.67 23.12 6.62 KM Plot
PCPG rs447869 chr5:141188750 A/C 0 178 15.08 32.02 24.52 KM Plot
PCPG rs4496359 chr2:242593679 C/T 7.93E-6 172 27.23 24.85 14.8 KM Plot
PCPG rs4504281 chr4:78954098 G/A 0 175 2.93 25.43 25.47 KM Plot